{ "Info": { "title": "iReceptor Service", "description": "AIRR Data Commons API for iReceptor", "version": "4.0", "last_update": null, "contact": { "name": "iReceptor", "url": "http://ireceptor.org", "email": "support@ireceptor.org" }, "license": { "name": "GNU LGPL V3" }, "api": { "title": "AIRR Data Commons API", "version": "1.2.0", "contact": { "name": "AIRR Community", "url": "https://www.antibodysociety.org/the-airr-community/", "email": "join@airr-community.org", "description": "Major Version 1 of the Adaptive Immune Receptor Repertoire (AIRR) data repository web service application programming interface (API)." } }, "schema": { "title": "AIRR Schema", "description": "Schema definitions for AIRR standards objects", "version": "1.4.0", "contact": { "name": "AIRR Community", "url": "https://github.com/airr-community" } } }, "Rearrangement": [ { "sequence": "GGGAGTGTCCCTGGCCCGAAGAACTGCCCATAGCTAGTAACCGCACTGCTGGCACAGAAGTACACAGATGTCTGGGAGGGAGCAGCCGACTCCAGCCTGA", "quality": null, "sequence_aa": null, "rev_comp": null, "productive": 1, "vj_in_frame": null, "stop_codon": null, "complete_vdj": null, "locus": "TRB", "v_call": "TRBV6-1*01", "d_call": "TRBD2*01", "d2_call": null, "j_call": "TRBJ2-1*01", "c_call": null, "sequence_alignment": null, "quality_alignment": null, "sequence_alignment_aa": null, "germline_alignment": null, "germline_alignment_aa": null, "junction": "TGTGCCAGCAGTGCGGTTACTAGCTATGGGCAGTTCTTC", "junction_aa": "CASSAVTSYGQFF", "np1": null, "np1_aa": null, "np2": null, "np2_aa": null, "np3": null, "np3_aa": null, "cdr1": null, "cdr1_aa": null, "cdr2": null, "cdr2_aa": null, "cdr3": null, "cdr3_aa": null, "fwr1": null, "fwr1_aa": null, "fwr2": null, "fwr2_aa": null, "fwr3": null, "fwr3_aa": null, "fwr4": null, "fwr4_aa": null, "v_score": 285, "v_identity": null, "v_support": null, "v_cigar": null, "d_score": null, "d_identity": null, "d_support": null, "d_cigar": null, "d2_score": null, "d2_identity": null, "d2_support": null, "d2_cigar": null, "j_score": null, "j_identity": null, "j_support": null, "j_cigar": null, "c_score": null, "c_identity": null, "c_support": null, "c_cigar": null, "v_sequence_start": null, "v_sequence_end": null, "v_germline_start": null, "v_germline_end": null, "v_alignment_start": null, "v_alignment_end": null, "d_sequence_start": null, "d_sequence_end": null, "d_germline_start": null, "d_germline_end": null, "d_alignment_start": null, "d_alignment_end": null, "d2_sequence_start": null, "d2_sequence_end": null, "d2_germline_start": null, "d2_germline_end": null, "d2_alignment_start": null, "d2_alignment_end": null, "j_sequence_start": null, "j_sequence_end": null, "j_germline_start": null, "j_germline_end": null, "j_alignment_start": null, "j_alignment_end": null, "c_sequence_start": null, "c_sequence_end": null, "c_germline_start": null, "c_germline_end": null, "c_alignment_start": null, "c_alignment_end": null, "cdr1_start": null, "cdr1_end": null, "cdr2_start": null, "cdr2_end": null, "cdr3_start": null, "cdr3_end": null, "fwr1_start": null, "fwr1_end": null, "fwr2_start": null, "fwr2_end": null, "fwr3_start": null, "fwr3_end": null, "fwr4_start": null, "fwr4_end": null, "v_sequence_alignment": null, "v_sequence_alignment_aa": null, "d_sequence_alignment": null, "d_sequence_alignment_aa": null, "d2_sequence_alignment": null, "d2_sequence_alignment_aa": null, "j_sequence_alignment": null, "j_sequence_alignment_aa": null, "c_sequence_alignment": null, "c_sequence_alignment_aa": null, "v_germline_alignment": null, "v_germline_alignment_aa": null, "d_germline_alignment": null, "d_germline_alignment_aa": null, "d2_germline_alignment": null, "d2_germline_alignment_aa": null, "j_germline_alignment": null, "j_germline_alignment_aa": null, "c_germline_alignment": null, "c_germline_alignment_aa": null, "junction_length": 39, "junction_aa_length": 13, "np1_length": null, "np2_length": null, "np3_length": null, "n1_length": null, "n2_length": null, "n3_length": null, "p3v_length": null, "p5d_length": null, "p3d_length": null, "p5d2_length": null, "p3d2_length": null, "p5j_length": null, "v_frameshift": null, "j_frameshift": null, "d_frame": null, "d2_frame": null, "consensus_count": null, "duplicate_count": null, "umi_count": null, "cell_id": null, "clone_id": null, "sequence_id": "5a569f37b4737f2f5c196e4e", "repertoire_id": 270, "sample_processing_id": null, "data_processing_id": null, "germline_database": null, "v_subgroup": "TRBV6", "v_gene": "TRBV6-1", "j_subgroup": "TRBJ2", "j_gene": "TRBJ2-1", "d_subgroup": "TRBD2", "d_gene": "TRBD2", "substring": [ "CASS", "CASSA", "CASSAV", "CASSAVT", "CASSAVTS", "CASSAVTSY", "CASSAVTSYG", "CASSAVTSYGQ", "CASSAVTSYGQF", "CASSAVTSYGQFF", "ASSA", "ASSAV", "ASSAVT", "ASSAVTS", "ASSAVTSY", "ASSAVTSYG", "ASSAVTSYGQ", "ASSAVTSYGQF", "ASSAVTSYGQFF", "SSAV", "SSAVT", "SSAVTS", "SSAVTSY", "SSAVTSYG", "SSAVTSYGQ", "SSAVTSYGQF", "SSAVTSYGQFF", "SAVT", "SAVTS", "SAVTSY", "SAVTSYG", "SAVTSYGQ", "SAVTSYGQF", "SAVTSYGQFF", "AVTS", "AVTSY", "AVTSYG", "AVTSYGQ", "AVTSYGQF", "AVTSYGQFF", "VTSY", "VTSYG", "VTSYGQ", "VTSYGQF", "VTSYGQFF", "TSYG", "TSYGQ", "TSYGQF", "TSYGQFF", "SYGQ", "SYGQF", "SYGQFF", "YGQF", "YGQFF", "GQFF" ], "functionality": "productive", "seq_name": "SRR1033671.8530186 HWI-ST1155:138:D1HYVACXX:2:2113:14810:7067 length=100", "ir_annotation_tool": "MiXCR", "adc_publish_date": null, "adc_update_date": "2022-08-24T04:57:06.162975" } ] }