{
    "Info": {
        "Info": {
            "title": "iReceptor Service",
            "description": "AIRR Data Commons API for iReceptor",
            "version": "4.0",
            "last_update": null,
            "contact": {
                "name": "iReceptor",
                "url": "http://ireceptor.org",
                "email": "support@ireceptor.org"
            },
            "license": {
                "name": "GNU LGPL V3"
            },
            "api": {
                "title": "AIRR Data Commons API",
                "version": "1.2.0",
                "contact": {
                    "name": "AIRR Community",
                    "url": "https://www.antibodysociety.org/the-airr-community/",
                    "email": "join@airr-community.org",
                    "description": "Major Version 1 of the Adaptive Immune Receptor Repertoire (AIRR) data repository web service application programming interface (API)."
                }
            },
            "schema": {
                "title": "AIRR Schema",
                "description": "Schema definitions for AIRR standards objects",
                "version": "1.4.0",
                "contact": {
                    "name": "AIRR Community",
                    "url": "https://github.com/airr-community"
                }
            }
        }
    },
    "Repertoire": [
        {
            "repertoire_id": "4",
            "repertoire_name": null,
            "repertoire_description": null,
            "study": {
                "study_id": "PRJEB9332",
                "study_title": "Chang et al., Network Signatures of IgG Immune Repertoires in Hepatitis B Associated Chronic Infection and Vaccination Responses.",
                "study_type": {
                    "label": "Case-Control Study",
                    "id": "NCIT:C15197"
                },
                "study_description": "Hepatitis B Study",
                "inclusion_exclusion_criteria": null,
                "grants": null,
                "study_contact": "Hong-Hsing Liu, hhliu@nhri.org.tw, https://orcid.org/0000-0002-3745-7202",
                "collected_by": "hhliu@nhri.org.tw",
                "lab_name": "Institute of Molecular and Genomic Medicine, National Health Research Institutes",
                "lab_address": null,
                "submitted_by": "Chang, Y.H., Kuan, H.C.",
                "pub_ids": "PMID: 27222149",
                "keywords_study": [
                    "contains_ig",
                    "contains_schema_rearrangement"
                ],
                "adc_publish_date": null,
                "adc_update_date": null
            },
            "subject": {
                "subject_id": "Adult 2",
                "synthetic": false,
                "species": {
                    "label": "Homo sapiens",
                    "id": "NCBITAXON:9606"
                },
                "sex": "female",
                "age_min": 35,
                "age_max": 35,
                "age_unit": {
                    "label": "year",
                    "id": "UO:0000036"
                },
                "age_event": null,
                "age": "35 years",
                "ancestry_population": null,
                "ethnicity": null,
                "race": null,
                "strain_name": null,
                "linked_subjects": null,
                "link_type": null,
                "diagnosis": [
                    {
                        "study_group_description": "Control (Healthy)",
                        "disease_diagnosis": {
                            "label": null,
                            "id": null
                        },
                        "disease_length": null,
                        "disease_stage": null,
                        "prior_therapies": null,
                        "immunogen": null,
                        "intervention": null,
                        "medical_history": null
                    }
                ],
                "genotype": {
                    "receptor_genotype_set": {
                        "receptor_genotype_set_id": null,
                        "genotype_class_list": [
                            {
                                "receptor_genotype_id": null,
                                "locus": null,
                                "documented_alleles": [
                                    {
                                        "label": null,
                                        "germline_set_ref": null,
                                        "phasing": null
                                    }
                                ],
                                "undocumented_alleles": [
                                    {
                                        "allele_name": null,
                                        "sequence": null,
                                        "phasing": null
                                    }
                                ],
                                "deleted_genes": [
                                    {
                                        "label": null,
                                        "germline_set_ref": null,
                                        "phasing": null
                                    }
                                ],
                                "inference_process": null
                            }
                        ]
                    },
                    "mhc_genotype_set": {
                        "mhc_genotype_set_id": null,
                        "mhc_genotype_class_list": [
                            {
                                "mhc_genotype_id": null,
                                "genotype_class": null
                            }
                        ],
                        "mhc_genotype_list": [
                            {
                                "mhc_alleles": [
                                    {
                                        "allele_designation": null,
                                        "gene": {
                                            "label": null,
                                            "id": null
                                        },
                                        "reference_set_ref": null
                                    }
                                ],
                                "mhc_genotyping_method": null
                            }
                        ]
                    }
                }
            },
            "sample": [
                {
                    "sample_processing_id": "415",
                    "sample_id": "A2wk1",
                    "sample_type": null,
                    "tissue": {
                        "label": "blood",
                        "id": "UBERON:0000178"
                    },
                    "anatomic_site": null,
                    "disease_state_sample": "Healthy",
                    "collection_time_point_relative": 1,
                    "collection_time_point_relative_unit": {
                        "label": "week",
                        "id": "UO:0000034"
                    },
                    "collection_time_point_reference": "Vaccination",
                    "biomaterial_provider": null,
                    "tissue_processing": null,
                    "cell_subset": {
                        "label": "plasma cell",
                        "id": "CL:0000786"
                    },
                    "cell_phenotype": null,
                    "cell_species": {
                        "label": "Homo sapiens",
                        "id": "NCBITAXON:9606"
                    },
                    "single_cell": false,
                    "cell_number": 2369736,
                    "cells_per_reaction": null,
                    "cell_storage": false,
                    "cell_quality": null,
                    "cell_isolation": null,
                    "cell_processing_protocol": null,
                    "template_class": "RNA",
                    "template_quality": null,
                    "template_amount": null,
                    "template_amount_unit": {
                        "label": null,
                        "id": null
                    },
                    "library_generation_method": "PCR",
                    "library_generation_protocol": null,
                    "library_generation_kit_version": null,
                    "pcr_target": [
                        {
                            "pcr_target_locus": "IGH",
                            "forward_pcr_primer_target_location": "IGHV",
                            "reverse_pcr_primer_target_location": "IGHC"
                        }
                    ],
                    "complete_sequences": "partial",
                    "physical_linkage": "none",
                    "sequencing_run_id": null,
                    "total_reads_passing_qc_filter": 1316424,
                    "sequencing_platform": "Illumina NextSeq",
                    "sequencing_facility": null,
                    "sequencing_run_date": null,
                    "sequencing_kit": null,
                    "sequencing_files": {
                        "sequencing_data_id": null,
                        "file_type": "fasta",
                        "filename": "paired_ERR1278153.fasta",
                        "read_direction": null,
                        "read_length": null,
                        "paired_filename": null,
                        "paired_read_direction": null,
                        "paired_read_length": null,
                        "index_filename": null,
                        "index_length": null
                    }
                }
            ],
            "data_processing": [
                {
                    "data_processing_id": "425",
                    "primary_annotation": true,
                    "software_versions": "SRA Toolkit 2.8.2-1, cutadapt 1.14, fastqc 0.11.5, pear 0.9.10, biopython 2.7.13, IMGT/V-QUEST 3.4.11",
                    "paired_reads_assembly": "pear -f ERR1278153_filtered_1.fastq -r ERR1278153_filtered_2.fastq -n 60 -t 60 -q 25 -o paired_ERR1278153.fastq",
                    "quality_thresholds": "25",
                    "primer_match_cutoffs": null,
                    "collapsing_method": null,
                    "data_processing_protocols": "Barcodes and primers removed and igblast/imgt annotation of quality filtered sequences",
                    "data_processing_files": "ERR1278153_aa.txz, ERR1278153_ab.txz, ERR1278153_ac.txz",
                    "germline_database": "IMGT",
                    "germline_set_ref": null,
                    "analysis_provenance_id": "425"
                }
            ],
            "organism": "Homo sapiens",
            "ir_sra_run_id": "ERS1065380",
            "ir_sequence_count": 1316424,
            "ir_fasta_file_name": "paired_ERR1278153.fasta",
            "ir_germline_database": "IMGT",
            "ir_library_source": "Transcriptomic",
            "ir_max_age": 35,
            "ir_min_age": 35,
            "ir_rearrangement_file_name": "ERR1278153_aa.txz, ERR1278153_ab.txz, ERR1278153_ac.txz",
            "ir_rearrangement_number": 425,
            "ir_rearrangement_tool": "IMGT high-Vquest",
            "ir_record_number": 415,
            "ir_curator_count": 1316424,
            "ir_ancillary_rearrangement_file_name": null,
            "ir_cell_storage": null,
            "﻿ir_record_number": 415,
            "ir_annotation_set_metadata_id": 4,
            "ir_updated_at": "2022-12-07T16:35:26.817251",
            "ir_v1-3_collection_time_point_relative": "Week 1",
            "ir-v1-3-template_amount": null
        }
    ]
}